PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G049500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 437aa    MW: 43132.7 Da    PI: 6.7314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G049500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12217262555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Seita.4G049500.1.p 217 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 262
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.41E-13210266No hitNo description
SuperFamilySSF474598.77E-17210272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16214271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9217262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MQPSGREIAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG NKSPWELAAG AEDAAVQAAF  60
GDESALLASR LRQHQIGGGD VKSSSSSPVM LQLSDLHRHG GGLAGGGAKE SGGFSPLPLF  120
TDRSAPAPEE MEGGFKSPNS AGGDHSLFNG FGMHGAASVQ PQFGQGGSMS PQSLGGPAAS  180
GGATPPAGGA ASSAGGGAAP PRQVRQRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP  240
NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGGGGAKG  300
SAGAATKGNG NGSGSGENGG GGGGLRVAEN QVAKMMEEDM GTAMQYLQGK GLCLMPISLA  360
SAISSATSSA SLLSRPPPVL RHAAANSNPA APGGQLHDVN NGAAAAATSP ASASSAGGGD  420
DSRSVKELGA SGGGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221226RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-57BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-57KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964663.10.0PREDICTED: transcription factor bHLH82
SwissprotQ9ZUG93e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLI1H0C61e-160I1H0C6_BRADI; Uncharacterized protein
STRINGBRADI1G47350.11e-159(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-37LJRHL1-like 2